PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09040.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 166aa    MW: 19457.1 Da    PI: 9.7764
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09040.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer795.9e-25353258
              ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                             +++ Y+eC++NhAa+lG++avDGC+E+ +       a++  CaACgCHR++HRr  +
  Rsa1.0_09040.1_g00001.1  3 SSCLYRECMRNHAAKLGSYAVDGCREYSQP------ATGDLCAACGCHRSYHRRIDV 53
                             5789***********************998......57789*************765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-17650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.911751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-1690163IPR009057Homeodomain-like
SuperFamilySSF466895.82E-896162IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-29105163IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPATGDLCAA CGCHRSYHRR IDVQPSGQVT  60
RARFPFTSLR RVKQLARLKW KAAAEEIEEE DTEETSTEEK MTVNRRRKSK FTAEQREAMR  120
DYAAKLGWTL KDKRAVREEI SVFCERIGVT RYLFKTWVNN NKKFYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RRRKSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069171e-145AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865231e-145AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039421e-145BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050271e-145BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026841e-145CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117884.11e-104PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW32e-94ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A078H8D41e-104A0A078H8D4_BRANA; BnaA09g45550D protein
TrEMBLM4EDF21e-104M4EDF2_BRARP; Uncharacterized protein
STRINGBra026812.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-93homeobox protein 32